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Viewing: CS 755 : Applied Research Methods and Analysis for Plant Sciences

Last approved: Thu, 02 Jun 2016 14:11:11 GMT

Last edit: Thu, 02 Jun 2016 14:11:05 GMT

Catalog Pages referencing this course
Change Type
CS (Crop Science)
Dual-Level Course
Cross-listed Course
Applied Research Methods and Analysis for Plant Sciences
Applied Research Plant Science
College of Agriculture and Life Sciences
Crop & Soil Science (11CS)
Term Offering
Fall Only
Offered Every Year
Fall 2016
Previously taught as Special Topics?
Course Prefix/NumberSemester/Term OfferedEnrollment
CS 590Fall 201516
CS 590Fall 20148
CS 590Fall 20139
CS 590Fall 201211
Course Delivery
Face-to-Face (On Campus)

Grading Method
Contact Hours
(Per Week)
Component TypeContact Hours
Course Attribute(s)

If your course includes any of the following competencies, check all that apply.
University Competencies

Course Is Repeatable for Credit
Grady L Miller
Professor and Extension Specialist

Open when course_delivery = campus OR course_delivery = blended OR course_delivery = flip
Enrollment ComponentPer SemesterPer SectionMultiple Sections?Comments
Lecture16NANotypically have had 8 - 12 students. Moving to scale up room in 2015 which had a limit of 20.
Open when course_delivery = distance OR course_delivery = online OR course_delivery = remote
Prerequisite: ST 511

Is the course required or an elective for a Curriculum?
Students will gain understanding of the common principles of scientific method. They will gain knowledge and experience with planning for research, developing research objectives, methodology considerations, experimental design, statistical analyses, and presentation of data. Class will have a heavy focus on experimental methods in applied plant science research.

This course is intended for Ph.D. and M.S. students in the plant sciences. It will address common principles of the scientific method. It is an applied course that includes some outdoor demonstration/experience with planning and set-up of field experiments. Students will gain knowledge and experience with plot layout, research scheduling, sampling, data collection, organization skills, record keeping, experimental design, statistical analysis, data presentation, and principles of preparation of data for journal article submission specifically focusing on applied plant science research. No other course offered at this institution addresses these aspects of applied plant science research methods. Students from a variety of applied programs would find this course useful.


Is this a GEP Course?
GEP Categories

Humanities Open when gep_category = HUM
Each course in the Humanities category of the General Education Program will provide instruction and guidance that help students to:






Mathematical Sciences Open when gep_category = MATH
Each course in the Mathematial Sciences category of the General Education Program will provide instruction and guidance that help students to:




Natural Sciences Open when gep_category = NATSCI
Each course in the Natural Sciences category of the General Education Program will provide instruction and guidance that help students to:




Social Sciences Open when gep_category = SOCSCI
Each course in the Social Sciences category of the General Education Program will provide instruction and guidance that help students to:






Interdisciplinary Perspectives Open when gep_category = INTERDISC
Each course in the Interdisciplinary Perspectives category of the General Education Program will provide instruction and guidance that help students to:








Visual & Performing Arts Open when gep_category = VPA
Each course in the Visual and Performing Arts category of the General Education Program will provide instruction and guidance that help students to:






Health and Exercise Studies Open when gep_category = HES
Each course in the Health and Exercise Studies category of the General Education Program will provide instruction and guidance that help students to:








Global Knowledge Open when gep_category = GLOBAL
Each course in the Global Knowledge category of the General Education Program will provide instruction and guidance that help students to achieve objective #1 plus at least one of objectives 2, 3, and 4:


Please complete at least 1 of the following student objectives.






US Diversity Open when gep_category = USDIV
Each course in the US Diversity category of the General Education Program will provide instruction and guidance that help students to achieve at least 2 of the following objectives:
Please complete at least 2 of the following student objectives.








Requisites and Scheduling
a. If seats are restricted, describe the restrictions being applied.

b. Is this restriction listed in the course catalog description for the course?

List all course pre-requisites, co-requisites, and restrictive statements (ex: Jr standing; Chemistry majors only). If none, state none.

List any discipline specific background or skills that a student is expected to have prior to taking this course. If none, state none. (ex: ability to analyze historical text; prepare a lesson plan)

Additional Information
Complete the following 3 questions or attach a syllabus that includes this information. If a 400-level or dual level course, a syllabus is required.
Title and author of any required text or publications.

Major topics to be covered and required readings including laboratory and studio topics.

List any required field trips, out of class activities, and/or guest speakers.

College(s)Contact NameStatement Summary
College of SciencesMontserrat Fuentes (Head) and Howard Bondell (DGP)"Statistics sees this course as an extension of, rather than a replacement for, the statistical training of these students. The fieldwork and direct applications in this course would be well suited to supplement the methodology. We would like to see the students taking this course in conjunction with ST 512 and/or ST 524, as all 3 courses would play important roles in their training."
Dr. Miller has a 17% (funded) academic appointment. No adjustment in his teaching appointment is needed or warranted. Any resources needed for the outside demonstration/experience portions of this course are borrowed from Dr. Miller’s research program. Students may use University computer centers or personal computers for required computer assignments. No other resources are required.

For students to be able to:

1) apply common principles of scientific method to field-based research,

2) independently design their own field studies including producing a plot plan, plot map, and research objectives,

3) determine the appropriate research methods and experimental design in context with their own studies,

4) correctly analyze commonly used experimental designs using current statistical analyses software,

5) students be able to summarize their analyzed data in a suitable format for the scientific community. 

Student Learning Outcomes

By the end of this course, students will be able to:

1) properly apply the scientific method.

2) formulate a needs assessment for field plot research materials.

3) design a field study and produce a corresponding plot plan.

4) write SAS code to analyze common models used in plant science research

5) interpret common ANOVA SAS output.

Evaluation MethodWeighting/Points for EachDetails
Exam25%Written mid-term exam
Major Paper13%Methods Paper (includes Oral Presentation)
presentation12%Oral presentation of Methods Paper
Final Exam25%Oral (1 to 1), Final exam
Homework25%Problem Sets
Discussion0%Journal article discussion as it relates to instruction topics.
TopicTime Devoted to Each TopicActivity
Survey of Class50 minutesGather background of each student so that more appropriate examples can be included throughout semester. In some cases, data may be obtained from either the student or a faculty to better illustrate subject area (methodology/analysis).
2. Inappropriate scientific presentation and misuse of statistics50 minutesWarning to students to resist any/all temptations to misuse statistics in presentation of research data. Examples of previous cases shared.
3. Basic Statistic/Research Principles – A Review250 minutesReview commonly mis-understood principles so everyone is has a good foundation.
• Premise of Statistics
• Basic Field Research and Terminology
• Rounding and Reporting Numbers
• Scientific Method
• Randomization in Field Plots
• Variability
• Principles of Design
4. Experimental Planning and Field Experiment Considerations 150 minutesCombination of lecture with examples and will go to the field to demonstrate some principles.
5. Development and Evaluation of Plot Plans and Plot Maps (includes outside demonstration/project assignment)150 minutesFollow up on previous exercise which includes outside demonstration. This also requires homework sets so students can show competence in subject.
6. Procurement of Supplies and Resources in Research50 minuteslecture/examples
7. Statistical Designs and Treatment Arrangements – with specific plant science examples (includes outside demonstration/project assignment)150 minuteslectures, plant science examples and normally includes some outside demonstration/project assignment
8. Data Management – problem sets100 minutesSeveral problem sets to be completed with discussion between submissions.
9. Introduction of Data Transformations and using Scales50 minuteslecture, normally incorporated into problem set(s).
10. Introduction to Covariance Analysis50 minuteslecture, normally incorporated into problem set(s)
11. Analysis of Data – problem sets***250 minutesSeveral problem sets to be completed with discussion between submissions.
12. Presentation of Data following Analysis100 minuteslecture/examples with discussion time for students to relate their own research.
13. Critique and Discussion of Selected Current Literature as it Relates to Class Subject – will be incorporated throughout semester200 minutesDiscussion of current literate as it related to class subject.
14. Journal Publications Process Overview50 minutesLecture/examples with Q&A period
15. Presentation of Methodology Papers (teaching moments)150 minutesstudent presentation with discussion that follows.
mlnosbis 4/11/2016: No overlapping courses. Possible consult with College of Sciences since this is a new course.

ghodge 4/11/2016 Consultation provided by COS. Ready for ABGS reviewers.

ABGS Reviewer Comments:
-No issues.
dfrpp (Thu, 23 Apr 2015 20:54:25 GMT): Rollback: Needs committee review
renutt (Mon, 24 Aug 2015 12:18:38 GMT): Rollback: -Work on abbreviated title so it gives more information to someone looking into course; try to include Plant Sciences or an abbreviation of that in the title. -GSC had a question of how long a course is - 15 or 16 weeks; Semesters are traditionally 15 weeks long not including exam week so this may need an edit once you double-check -The catalog description is redundant - the committee feels that the last sentence could be deleted to resolve this issue. -You mention some "outside" time for the course; GSC assumed you meant just outdoors from building but you should clarify whether this is outdoors or off site. -Cut the last sentence of the course justification so that you don't have to do consultations with each of those departments. You could also reword that sentence with a vauge statment about how students from a variety of programs would find this course useful. -Student objectives and learning outcomes need to be terms listed here: They must be measurable. -Remove the sentence that states that this course has been taught 6 out of the last 7 semesters in the resources statement. -You may need more than one student learning outcome. Most courses have 3-4 outcomes. Again, they must be measurable. -Remove the additional statements from this course action.
Key: 7230